Hierarchy For Package cct.modelling

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • cct.modelling.BondsArray
        • cct.modelling.MolecularGeometry
        • cct.modelling.Monomer (implements cct.interfaces.MonomerInterface)
  • cct.modelling.AngleBend
  • cct.modelling.AngleBendEnergy
  • cct.modelling.AngleBendsArray
  • cct.modelling.AtomGenerator
  • cct.modelling.AtomGeometry
    • cct.modelling.CCTAtomTypes (implements java.util.Comparator<T>)
  • cct.modelling.AtomsArray
  • cct.modelling.AtomTypeDef (implements cct.modelling.AtomProperties)
  • cct.modelling.AtomTypes (implements cct.modelling.AtomProperties)
  • cct.modelling.BasicFragment (implements java.lang.Comparable<T>)
  • cct.modelling.BasicFragment.CarbonDivalentStr
  • cct.modelling.Bond (implements cct.interfaces.BondInterface)
  • cct.modelling.BondStretchEnergy
  • cct.modelling.BondStretchPairs
  • cct.modelling.ChemicalElements
  • cct.modelling.CoordBuilder
  • cct.modelling.CoordParser
  • cct.modelling.FFMolecule
  • cct.modelling.FormatManager
  • cct.modelling.FormatManager.ParserComparator (implements java.util.Comparator<T>)
  • cct.modelling.FormatManager.ParserScore
  • cct.modelling.Frequencies
  • cct.modelling.HarmonicBondStretch
  • cct.modelling.JobControl
  • cct.modelling.MinimizeStructure
  • cct.modelling.MolecularEditor (implements cct.modelling.OperationsOnAtoms)
  • cct.modelling.MolecularEnergy (implements cct.math.MinimizedFunctionInterface)
  • cct.modelling.MolecularFileFormats
  • cct.modelling.Molecule (implements cct.modelling.AtomProperties, cct.interfaces.MoleculeInterface)
  • cct.modelling.Nonbonded15Table
  • cct.modelling.NonbondedEnergy
  • cct.modelling.NonbondedPair
  • cct.modelling.ParseTriposMol2 (implements cct.modelling.AtomProperties)
  • cct.modelling.SaveGJF
  • cct.modelling.SingleTrajectory
  • cct.modelling.StructureManager
  • cct.tools.SwingWorker
    • cct.modelling.BackgroundMinimizer (implements cct.interfaces.MinimizeProgressInterface)
  • cct.modelling.Torsion
  • cct.modelling.TorsionEnergy
  • cct.modelling.TorsionParameter
  • cct.modelling.TorsionTerm
  • cct.modelling.TrajectorySnapshot
  • cct.vecmath.vPoint3f (implements cct.interfaces.Point3fInterface)
    • cct.modelling.vAtom (implements cct.interfaces.AtomInterface)
      • cct.modelling.gAtom (implements cct.interfaces.AtomInterface)

Interface Hierarchy

• cct.modelling.AtomProperties
• cct.modelling.MolecularProperties
• cct.modelling.OperationsOnAtoms
• cct.modelling.StructureManagerInterface
• cct.modelling.TrajectoryClientInterface

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • cct.modelling.VIBRATIONAL_SPECTRUM_CURVE
    • cct.modelling.VIBRATIONAL_SPECTRUM
    • cct.modelling.TRAJECTORY_FILE_FORMAT
    • cct.modelling.CHEMISTRY_FILE_FORMAT
    • cct.modelling.CELL_PARAMETER